BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008B03SP1|AL425805
(728 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1371 0.0
>3x_Contig1801
Length = 57606
Score = 1371 bits (683), Expect = 0.0
Identities = 709/726 (97%)
Strand = Plus / Minus
Query: 1 tacantcctctggccgcatggatcttctattgggaattggtggaatgacaagaaagaaaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56065 tacattcctctggccgcatggatcttctattgggaattggtggaatgacaagaaagaaaa 56006
Query: 61 aatagcgttcacgtgaccgtwgtcatgaaatcaaaagaaaaawttccaattgtatgtmac 120
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct: 56005 aatagcgttcacgtgaccgttgtcatgaaatcaaaagaaaaatttccaattgtatgttac 55946
Query: 121 ccggtcacaaagttgcacacgaaaacctgtgtcatcaatttatttatatttcygtatatc 180
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 55945 ccggtcacaaagttgcacacgaaaacctgtgttatcaatttatttatatttctgtatatt 55886
Query: 181 aaaygcatcyygttaaaacgcgtgaacytgtcattacagcagactcatctttaacagcag 240
||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 55885 aaatgcatcttgttaaaacgcgtgaacttgtcattacagcagactcatctttaacagcag 55826
Query: 241 caaccagcaaccaacaaccgccagtgatgtccaaccaaacgccaagaattgacccgagcc 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 55825 caaccagcaaccaacaaccgctagtgatgtccaaccaaacgccaagaattgacccgagcc 55766
Query: 301 aaataagcaawactcagcactcagtgtttcgtatcayagccaaggtgttagatcaaccac 360
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 55765 aaataagcaatactcagcactcagtgtttcgtatcatagccaaggtgttagatcaaccac 55706
Query: 361 aaccaaaagagttaatccyacaatctccaacaaccaatggagaaatgataacgcyatcac 420
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 55705 aaccaaaagagttaatcctacaatctccaacaaccaatggagaaatgataacgctatcac 55646
Query: 421 aagtgaaactgtcacaaggaagtaacattgaggttggatcctggtacgaatttgtttgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55645 aagtgaaactgtcacaaggaagtaacattgaggttggatcctggtacgaatttgtttgca 55586
Query: 481 gaaatgtcgataccggtgatattgggttgatggtgcttgattctgtgaaatgtgagcyga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 55585 gaaatgtcgataccggtgatattgggttgatggtgcttgattctgtgaaatgtgagctga 55526
Query: 541 aagaaggtgaagagatcagtgtttctggtatagttgcattacaacaattgagtggcaagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55525 aagaaggtgaagagatcagtgtttctggtatagttgcattacaacaattgagtggcaagt 55466
Query: 601 tcccagatttgtactaagtttttacgtttgaaaagaggggaggatggtgagaggacaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55465 tcccagatttgtactaagtttttacgtttgaaaagaggggaggatggtgagaggacaaaa 55406
Query: 661 ctggaaagaattataaatatatgagtgtgtgtgttttttttttgatttgtataagtatat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55405 ctggaaagaattataaatatatgagtgtgtgtgttttttttttgatttgtataagtatat 55346
Query: 721 ttatat 726
||||||
Sbjct: 55345 ttatat 55340
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6788
Number of Sequences: 1807
Number of extensions: 6788
Number of successful extensions: 192
Number of sequences better than 1.0e-20: 1
length of query: 728
length of database: 10,358,551
effective HSP length: 16
effective length of query: 712
effective length of database: 10,329,639
effective search space: 7354702968
effective search space used: 7354702968
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (100.9 bits)